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1.
Biochim Biophys Acta Bioenerg ; 1864(3): 148975, 2023 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-37001791

RESUMO

Chromatophores (Chr) from photosynthetic nonsulfur purple bacterium Rhodobacter sphaeroides immobilized onto a Millipore membrane filter (MF) and sandwiched between two semiconductor indium tin oxide (ITO) electrodes (termed ITO|Chr - MF|ITO) have been used to measure voltage (ΔV) induced by continuous illumination. The maximum ΔV was detected in the presence of ascorbate / N,N,N'N'-tetramethyl-p-phenylenediamine couple, coenzyme UQ0, disaccaride trehalose and antimycin A, an inhibitor of cytochrome bc1 complex. In doing so, the light-induced electron transfer in the reaction centers was the major source of photovoltages. The stability of the voltage signal upon prolonged irradiation (>1 h) may be due to the maintenance of a conformation that is optimal for the functioning of integral protein complexes and stabilization of lipid bilayer membranes in the presence of trehalose. Retaining ∼70 % of the original photovoltage performance on the 30th day of storage at 23 °C in the dark under air was achieved after re-injection of fresh buffer (∼40 µL) containing redox mediators into the ITO|Chr - MF|ITO system. The approach we use is easy and can be extended to other biological intact systems (cells, thylakoid membranes) capable of converting energy of light.


Assuntos
Cromatóforos Bacterianos , Cromatóforos , Cromatóforos Bacterianos/metabolismo , Trealose , Fotossíntese , Eletricidade
2.
Proc Natl Acad Sci U S A ; 118(7)2021 02 16.
Artigo em Inglês | MEDLINE | ID: mdl-33526592

RESUMO

The construction of energetically autonomous artificial protocells is one of the most ambitious goals in bottom-up synthetic biology. Here, we show an efficient manner to build adenosine 5'-triphosphate (ATP) synthesizing hybrid multicompartment protocells. Bacterial chromatophores from Rhodobacter sphaeroides accomplish the photophosphorylation of adenosine 5'-diphosphate (ADP) to ATP, functioning as nanosized photosynthetic organellae when encapsulated inside artificial giant phospholipid vesicles (ATP production rate up to ∼100 ATP∙s-1 per ATP synthase). The chromatophore morphology and the orientation of the photophosphorylation proteins were characterized by cryo-electron microscopy (cryo-EM) and time-resolved spectroscopy. The freshly synthesized ATP has been employed for sustaining the transcription of a DNA gene, following the RNA biosynthesis inside individual vesicles by confocal microscopy. The hybrid multicompartment approach here proposed is very promising for the construction of full-fledged artificial protocells because it relies on easy-to-obtain and ready-to-use chromatophores, paving the way for artificial simplified-autotroph protocells (ASAPs).


Assuntos
Trifosfato de Adenosina/biossíntese , Células Artificiais/metabolismo , Cromatóforos Bacterianos/metabolismo , Transcrição Gênica , Complexos de ATP Sintetase/genética , Complexos de ATP Sintetase/metabolismo , Células Artificiais/química , Cromatóforos Bacterianos/ultraestrutura , Fotossíntese , Rhodobacter sphaeroides/metabolismo , Luz Solar , Biologia Sintética/métodos
3.
Annu Rev Microbiol ; 74: 633-654, 2020 09 08.
Artigo em Inglês | MEDLINE | ID: mdl-32689916

RESUMO

Photosynthetic membranes are typically densely packed with proteins, and this is crucial for their function in efficient trapping of light energy. Despite being crowded with protein, the membranes are fluid systems in which proteins and smaller molecules can diffuse. Fluidity is also crucial for photosynthetic function, as it is essential for biogenesis, electron transport, and protein redistribution for functional regulation. All photosynthetic membranes seem to maintain a delicate balance between crowding, order, and fluidity. How does this work in phototrophic bacteria? In this review, we focus on two types of intensively studied bacterial photosynthetic membranes: the chromatophore membranes of purple bacteria and the thylakoid membranes of cyanobacteria. Both systems are distinct from the plasma membrane, and both have a distinctive protein composition that reflects their specialized roles. Chromatophores are formed from plasma membrane invaginations, while thylakoid membranes appear to be an independent intracellular membrane system. We discuss the techniques that can be applied to study the organization and dynamics of these membrane systems, including electron microscopy techniques, atomic force microscopy, and many variants of fluorescence microscopy. We go on to discuss the insights that havebeen acquired from these techniques, and the role of membrane dynamics in the physiology of photosynthetic membranes. Membrane dynamics on multiple timescales are crucial for membrane function, from electron transport on timescales of microseconds to milliseconds to regulation and biogenesis on timescales of minutes to hours. We emphasize the open questions that remain in the field.


Assuntos
Cromatóforos Bacterianos/metabolismo , Cianobactérias/metabolismo , Fotossíntese/fisiologia , Tilacoides/metabolismo , Cianobactérias/química , Cianobactérias/genética , Transporte de Elétrons , Microscopia/classificação , Microscopia/métodos , Fotossíntese/genética , Tilacoides/química
4.
Biochim Biophys Acta Bioenerg ; 1860(6): 461-468, 2019 06 01.
Artigo em Inglês | MEDLINE | ID: mdl-30974094

RESUMO

In contrast to plants, algae and cyanobacteria that contain glycolipids as the major lipid components in their photosynthetic membranes, phospholipids are the dominant lipids in the membranes of anoxygenic purple phototrophic bacteria. Although the phospholipid compositions in whole cells or membranes are known for a limited number of the purple bacteria, little is known about the phospholipids associated with individual photosynthetic complexes. In this study, we investigated the phospholipid distributions in both membranes and the light-harvesting 1-reaction center (LH1-RC) complexes purified from several purple sulfur and nonsulfur bacteria. 31P NMR was used for determining the phospholipid compositions and inductively coupled plasma atomic emission spectroscopy was used for measuring the total phosphorous contents. Combining these two techniques, we could determine the numbers of specific phospholipids in the purified LH1-RC complexes. A total of approximate 20-30 phospholipids per LH1-RC were detected as the tightly bound lipids in all species. The results revealed that while cardiolipin (CL) exists as a minor component in the membranes, it became the most abundant phospholipid in the purified core complexes and the sum of CL and phosphatidylglycerol accounted for more than two thirds of the total phospholipids for most species. Preferential association of these anionic phospholipids with the LH1-RC is discussed in the context of the recent high-resolution structure of this complex from Thermochromatium (Tch.) tepidum. The detergent lauryldimethylamine N-oxide was demonstrated to selectively remove phosphatidylethanolamine from the membrane of Tch. tepidum.


Assuntos
Membrana Celular/metabolismo , Chromatiaceae/metabolismo , Complexos de Proteínas Captadores de Luz/metabolismo , Fosfolipídeos/metabolismo , Cromatóforos Bacterianos/química , Cromatóforos Bacterianos/metabolismo , Membrana Celular/química , Chromatiaceae/química , Escherichia coli/química , Escherichia coli/metabolismo , Hyphomicrobiaceae/química , Hyphomicrobiaceae/metabolismo , Complexos de Proteínas Captadores de Luz/química , Ressonância Magnética Nuclear Biomolecular , Fosfolipídeos/química , Rhodobacter sphaeroides/química , Rhodobacter sphaeroides/metabolismo , Rhodospirillum rubrum/química , Rhodospirillum rubrum/metabolismo , Espectrofotometria Atômica
5.
Biochim Biophys Acta Bioenerg ; 1859(3): 215-225, 2018 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-29291373

RESUMO

Intracytoplasmic vesicles (chromatophores) in the photosynthetic bacterium Rhodobacter sphaeroides represent a minimal structural and functional unit for absorbing photons and utilising their energy for the generation of ATP. The cytochrome bc1 complex (cytbc1) is one of the four major components of the chromatophore alongside the reaction centre-light harvesting 1-PufX core complex (RC-LH1-PufX), the light-harvesting 2 complex (LH2), and ATP synthase. Although the membrane organisation of these complexes is known, their local lipid environments have not been investigated. Here we utilise poly(styrene-alt-maleic acid) (SMA) co-polymers as a tool to simultaneously determine the local lipid environments of the RC-LH1-PufX, LH2 and cytbc1 complexes. SMA has previously been reported to effectively solubilise complexes in lipid-rich membrane regions whilst leaving lipid-poor ordered protein arrays intact. Here we show that SMA solubilises cytbc1 complexes with an efficiency of nearly 70%, whereas solubilisation of RC-LH1-PufX and LH2 was only 10% and 22% respectively. This high susceptibility of cytbc1 to SMA solubilisation is consistent with this complex residing in a locally lipid-rich region. SMA solubilised cytbc1 complexes retain their native dimeric structure and co-purify with 56±6 phospholipids from the chromatophore membrane. We extended this approach to the model cyanobacterium Synechocystis sp. PCC 6803, and show that the cytochrome b6f complex (cytb6f) and Photosystem II (PSII) complexes are susceptible to SMA solubilisation, suggesting they also reside in lipid-rich environments. Thus, lipid-rich membrane regions could be a general requirement for cytbc1/cytb6f complexes, providing a favourable local solvent to promote rapid quinol/quinone binding and release at the Q0 and Qi sites.


Assuntos
Proteínas de Bactérias/química , Complexo Citocromos b6f/química , Complexo III da Cadeia de Transporte de Elétrons/química , Maleatos/química , Lipídeos de Membrana/química , Poliestirenos/química , Cromatóforos Bacterianos/química , Cromatóforos Bacterianos/metabolismo , Cromatóforos Bacterianos/ultraestrutura , Proteínas de Bactérias/metabolismo , Complexo Citocromos b6f/metabolismo , Complexo III da Cadeia de Transporte de Elétrons/metabolismo , Transferência de Energia , Complexos de Proteínas Captadores de Luz/química , Complexos de Proteínas Captadores de Luz/metabolismo , Maleatos/metabolismo , Lipídeos de Membrana/metabolismo , Microscopia Eletrônica de Transmissão , Modelos Moleculares , Complexo de Proteína do Fotossistema II/química , Complexo de Proteína do Fotossistema II/metabolismo , Poliestirenos/metabolismo , Rhodobacter sphaeroides/metabolismo , Solubilidade , Synechocystis/metabolismo , Tilacoides/química , Tilacoides/metabolismo , Tilacoides/ultraestrutura
6.
J Phys Chem B ; 121(15): 3787-3797, 2017 04 20.
Artigo em Inglês | MEDLINE | ID: mdl-28301162

RESUMO

Cell doubling times of the purple bacterium Rhodobacter sphaeroides during photosynthetic growth are determined experimentally and computationally as a function of illumination. For this purpose, energy conversion processes in an intracytoplasmic membrane vesicle, the chromatophore, are described based on an atomic detail structural model. The cell doubling time and its illumination dependence are computed in terms of the return-on-investment (ROI) time of the chromatophore, determined computationally from the ATP production rate, and the mass ratio of chromatophores in the cell, determined experimentally from whole cell absorbance spectra. The ROI time is defined as the time it takes to produce enough ATP to pay for the construction of another chromatophore. The ROI time of the low light-growth chromatophore is 4.5-2.6 h for a typical illumination range of 10-100 µmol photons m-2 s-1, respectively, with corresponding cell doubling times of 8.2-3.9 h. When energy expenditure is considered as a currency, the benefit-to-cost ratio computed for the chromatophore as an energy harvesting device is 2-8 times greater than for photovoltaic and fossil fuel-based energy solutions and the corresponding ROI times are approximately 3-4 orders of magnitude shorter for the chromatophore than for synthetic systems.


Assuntos
Cromatóforos Bacterianos/química , Complexos de Proteínas Captadores de Luz/química , Simulação de Dinâmica Molecular , Rhodobacter sphaeroides/metabolismo , Trifosfato de Adenosina/biossíntese , Cromatóforos Bacterianos/metabolismo , Complexos de Proteínas Captadores de Luz/metabolismo , Conformação Proteica , Rhodobacter sphaeroides/química , Rhodobacter sphaeroides/citologia , Fatores de Tempo
7.
Elife ; 52016 08 26.
Artigo em Inglês | MEDLINE | ID: mdl-27564854

RESUMO

The chromatophore of purple bacteria is an intracellular spherical vesicle that exists in numerous copies in the cell and that efficiently converts sunlight into ATP synthesis, operating typically under low light conditions. Building on an atomic-level structural model of a low-light-adapted chromatophore vesicle from Rhodobacter sphaeroides, we investigate the cooperation between more than a hundred protein complexes in the vesicle. The steady-state ATP production rate as a function of incident light intensity is determined after identifying quinol turnover at the cytochrome bc1 complex (cytb⁢c1) as rate limiting and assuming that the quinone/quinol pool of about 900 molecules acts in a quasi-stationary state. For an illumination condition equivalent to 1% of full sunlight, the vesicle exhibits an ATP production rate of 82 ATP molecules/s. The energy conversion efficiency of ATP synthesis at illuminations corresponding to 1%-5% of full sunlight is calculated to be 0.12-0.04, respectively. The vesicle stoichiometry, evolutionarily adapted to the low light intensities in the habitat of purple bacteria, is suboptimal for steady-state ATP turnover for the benefit of protection against over-illumination.


Assuntos
Trifosfato de Adenosina/biossíntese , Cromatóforos Bacterianos/metabolismo , Cromatóforos Bacterianos/efeitos da radiação , Metabolismo Energético , Rhodobacter sphaeroides/metabolismo , Rhodobacter sphaeroides/efeitos da radiação , Hidroquinonas/análise , Luz , Quinonas/análise
8.
Biochim Biophys Acta ; 1857(6): 634-42, 2016 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-27013332

RESUMO

In the purple phototrophic bacterium Rhodobacter sphaeroides, light harvesting LH2 complexes transfer absorbed solar energy to RC-LH1-PufX core complexes, which are mainly found in the dimeric state. Many other purple phototrophs have monomeric core complexes and the basis for requiring dimeric cores is not fully established, so we analysed strains of Rba. sphaeroides that contain either native dimeric core complexes or altered monomeric cores harbouring a deletion of the first 12 residues from the N-terminus of PufX, which retains the PufX polypeptide but removes the major determinant of core complex dimerization. Membranes were purified from strains with dimeric or monomeric cores, and with either high or low levels of the LH2 complex. Samples were interrogated with absorption, steady-state fluorescence, and picosecond time-resolved fluorescence kinetic spectroscopies to reveal their light-harvesting and energy trapping properties. We find that under saturating excitation light intensity the photosynthetic membranes containing LH2 and monomeric core complexes have fluorescence lifetimes nearly twice that of membranes with LH2 plus dimeric core complexes. This trend of increased lifetime is maintained with RCs in the open state as well, and for two different levels of LH2 content. Thus, energy trapping is more efficient when photosynthetic membranes of Rba. sphaeroides consist of RC-LH1-PufX dimers and LH2 complexes.


Assuntos
Cromatóforos Bacterianos/metabolismo , Proteínas de Bactérias/metabolismo , Complexos de Proteínas Captadores de Luz/metabolismo , Rhodobacter sphaeroides/metabolismo , Algoritmos , Cromatóforos Bacterianos/efeitos da radiação , Proteínas de Bactérias/química , Transferência de Energia/efeitos da radiação , Cinética , Luz , Complexos de Proteínas Captadores de Luz/química , Modelos Biológicos , Fotossíntese/efeitos da radiação , Multimerização Proteica/efeitos da radiação , Rhodobacter sphaeroides/efeitos da radiação , Espectrofotometria
9.
Photosynth Res ; 127(1): 13-24, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25512104

RESUMO

The photosynthetic apparatus in the bacterium Rhodobacter sphaeroides is mostly present in intracytoplasmic membrane invaginations. It has long been debated whether these invaginations remain in topological continuity with the cytoplasmic membrane, or form isolated chromatophore vesicles. This issue is revisited here by functional approaches. The ionophore gramicidin was used as a probe of the relative size of the electro-osmotic units in isolated chromatophores, spheroplasts, or intact cells. The decay of the membrane potential was monitored from the electrochromic shift of carotenoids. The half-time of the decay induced by a single channel in intact cells was about 6 ms, thus three orders of magnitude slower than in isolated chromatophores. In spheroplasts obtained by lysis of the cell wall, the single channel decay was still slower (~23 ms) and the sensitivity toward the gramicidin concentration was enhanced 1,000-fold with respect to isolated chromatophores. These results indicate that the area of the functional membrane in cells or spheroplasts is about three orders of magnitude larger than that of isolated chromatophores. Intracytoplasmic vesicles, if present, could contribute to at most 10% of the photosynthetic apparatus in intact cells of Rba. sphaeroides. Similar conclusions were obtained from the effect of a ∆pH-induced diffusion potential in intact cells. This caused a large electrochromic response of carotenoids, of similar amplitude as the light-induced change, indicating that most of the system is sensitive to a pH change of the external medium. A single internal membrane and periplasmic space may offer significant advantages concerning renewal of the photosynthetic apparatus and reallocation of the components shared with other bioenergetic pathways.


Assuntos
Membranas Intracelulares/metabolismo , Membranas Intracelulares/ultraestrutura , Rhodobacter sphaeroides/citologia , Cromatóforos Bacterianos/metabolismo , Carotenoides/metabolismo , Citoplasma/metabolismo , Relação Dose-Resposta a Droga , Gramicidina/administração & dosagem , Gramicidina/farmacologia , Concentração de Íons de Hidrogênio , Ionóforos/administração & dosagem , Ionóforos/farmacologia , Fotossíntese , Rhodobacter sphaeroides/efeitos dos fármacos , Rhodobacter sphaeroides/metabolismo , Esferoplastos/efeitos dos fármacos
10.
Biochim Biophys Acta ; 1848(11 Pt A): 2898-909, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-26343161

RESUMO

Ionic liquids (ILs) are promising materials exploited as solvents and media in many innovative applications, some already used at the industrial scale. The chemical structure and physicochemical properties of ILs can differ significantly according to the specific applications for which they have been synthesized. As a consequence, their interaction with biological entities and toxicity can vary substantially. To select highly effective and minimally harmful ILs, these properties need to be investigated. Here we use the so called chromatophores--protein-phospholipid membrane vesicles obtained from the photosynthetic bacterium Rhodobacter sphaeroides--to assess the effects of imidazolinium and pyrrolidinium ILs, with chloride or dicyanamide as counter anions, on the ionic permeability of a native biological membrane. The extent and modalities by which these ILs affect the ionic conductivity can be studied in chromatophores by analyzing the electrochromic response of endogenous carotenoids, acting as an intramembrane voltmeter at the molecular level. We show that chromatophores represent an in vitro experimental model suitable to probe permeability changes induced in cell membranes by ILs differing in chemical nature, degree of oxygenation of the cationic moiety and counter anion.


Assuntos
Cromatóforos Bacterianos/metabolismo , Carotenoides/metabolismo , Líquidos Iônicos/química , Rhodobacter sphaeroides/metabolismo , Algoritmos , Cromatóforos Bacterianos/efeitos dos fármacos , Cloretos/química , Imidazolinas/química , Líquidos Iônicos/farmacologia , Cinética , Espectroscopia de Ressonância Magnética , Estrutura Molecular , Oxirredução , Permeabilidade/efeitos dos fármacos , Pirrolidinas/química , Rhodobacter sphaeroides/efeitos dos fármacos , Espectrofotometria , Espectroscopia de Infravermelho com Transformada de Fourier
11.
Biophys J ; 106(11): 2503-10, 2014 Jun 03.
Artigo em Inglês | MEDLINE | ID: mdl-24896130

RESUMO

Purple photosynthetic bacteria harvest light using pigment-protein complexes which are often arranged in pseudo-organelles called chromatophores. A model of a chromatophore from Rhodospirillum photometricum was constructed based on atomic force microscopy data. Molecular-dynamics simulations and quantum-dynamics calculations were performed to characterize the intercomplex excitation transfer network and explore the interplay between close-packing and light-harvesting efficiency.


Assuntos
Cromatóforos Bacterianos/química , Proteínas de Bactérias/química , Complexos de Proteínas Captadores de Luz/química , Rhodospirillum/química , Absorção Fisico-Química , Sequência de Aminoácidos , Cromatóforos Bacterianos/metabolismo , Proteínas de Bactérias/metabolismo , Complexos de Proteínas Captadores de Luz/metabolismo , Simulação de Dinâmica Molecular , Dados de Sequência Molecular , Estrutura Terciária de Proteína , Rhodospirillum/metabolismo
12.
J Phys Chem B ; 117(38): 11249-59, 2013 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-23789750

RESUMO

Owing to the considerable current interest in replacing fossil fuels with solar radiation as a clean, renewable, and secure energy source, light-driven electron transport in natural photosynthetic systems offers a valuable blueprint for conversion of sunlight to useful energy forms. In particular, intracytoplasmic membrane vesicles (chromatophores) from the purple bacterium Rhodospirillum rubrum provide a fully functional and robust photosynthetic apparatus, ideal for biophysical investigations of energy transduction and incorporation into biohybrid photoelectrochemical devices. These vesicular organelles, which arise by invagination of the cytoplasmic membrane, are the sites of the photochemical reaction centers and the light harvesting 1 (LH1) complex. The LH1 protein is responsible for collecting visible and near-IR radiant energy and funneling these excitations to the reaction center for conversion into a transmembrane charge separation. Here, we have investigated the morphology, fluorescence kinetics and photocurrent generation of chromatophores from Rsp. rubrum deposited directly onto gold surfaces in the absence of chemical surface modifications. Atomic force microscopy showed a significant coverage of the gold electrode surface by Rsp. rubrum chromatophores. By in situ fluorescence induction/relaxation measurements, a high retention of the quantum yield of photochemistry was demonstrated in the photoactive films. Chronoamperometric measurements showed that the assembled bioelectrodes were capable of generating sustained photocurrent under white light illumination at 220 mW/cm(2) with a maximum current of 1.5 µA/cm(2), which slowly declines in about 1 week. This study demonstrates the possibility of photoelectrochemical control of robust chromatophore preparations from Rsp. rubrum that paves the way for future incorporation into functional solar cells.


Assuntos
Cromatóforos Bacterianos/química , Rhodospirillum rubrum/metabolismo , Energia Solar , Cromatóforos Bacterianos/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Citocromos c/química , Técnicas Eletroquímicas , Eletrodos , Ouro/química , Complexos de Proteínas Captadores de Luz/química , Complexos de Proteínas Captadores de Luz/metabolismo , Microscopia de Força Atômica , Teoria Quântica , Espectrometria de Fluorescência
13.
J Phys Chem B ; 115(24): 7906-13, 2011 Jun 23.
Artigo em Inglês | MEDLINE | ID: mdl-21630650

RESUMO

We carried out femtosecond magic-angle and polarized pump-probe spectroscopies for the light-harvesting complex 2 (LH2) from Thermochromatium (Tch.) tepidum in aqueous phase and in chromatophores. To examine the effects of LH2 aggregation on the dynamics of excitation energy transfer, dominant monodispersed and aggregated LH2s were prepared by controlling the surfactant concentrations. The aqueous preparations solubilized with different concentrations of n-dodecyl-ß-D-maltoside (DDM) show similar visible-to-near-infrared absorption spectra, but distinctively different aggregation states, as revealed by using dynamic light scattering. The B800 → B850 intra-LH2 energy transfer time was determined to be 1.3 ps for isolated LH2, which, upon aggregation in aqueous phase or clustering in chromatophores, shortened to 1.1 or 0.9 ps, respectively. The light-harvesting complex 1 (LH1) of this thermophilic purple sulfur bacterium contains bacteriochlorophyll a absorbing at 915 nm (B915), and the LH2(B850) → LH1(B915) intercomplex transfer time in chromatophores was found to be 6.6 ps. For chromatophores, a depolarization time of 21 ps was derived from the anisotropy kinetics of B850*, which is attributed to the migration of B850* excitation before being trapped by LH1. In addition, the B850* annihilation is accelerated upon LH2 aggregation in aqueous phase, but it is much less severe upon LH2 clustering in the intracytoplasmic membrane. These results are helpful in understanding the light-harvesting function of a bacterial photosynthetic membrane incorporating different types of antenna complexes.


Assuntos
Cromatóforos Bacterianos/metabolismo , Chromatiaceae/metabolismo , Complexos de Proteínas Captadores de Luz/química , Transferência de Energia , Glucosídeos , Cinética , Complexos de Proteínas Captadores de Luz/metabolismo , Água/química
14.
J Proteome Res ; 10(6): 2703-14, 2011 Jun 03.
Artigo em Inglês | MEDLINE | ID: mdl-21443180

RESUMO

The chromatophore membrane of the photosynthetic diazotroph Rhodospirillum rubrum is of vital importance for a number of central processes, including nitrogen fixation. Using a novel amphiphile, we have identified protein complexes present under different nitrogen availability conditions by the use of two-dimensional Blue Native/SDS-PAGE and NSI-LC-LTQ-Orbitrap mass spectrometry. We have identified several membrane protein complexes, including components of the ATP synthase, reaction center, light harvesting, and NADH dehydrogenase complexes. Additionally, we have identified differentially expressed proteins, such as subunits of the succinate dehydrogenase complex and other TCA cycle enzymes that are usually found in the cytosol, thus hinting at a possible association to the membrane in response to nitrogen deficiency. We propose a redox sensing mechanism that can influence the membrane subproteome in response to nitrogen availability.


Assuntos
Cromatóforos Bacterianos/metabolismo , Proteínas de Membrana/metabolismo , Nitrogênio/metabolismo , Rhodospirillum rubrum/metabolismo , Complexos de ATP Sintetase/química , Complexos de ATP Sintetase/metabolismo , Cloreto de Amônio/metabolismo , Cromatóforos Bacterianos/química , Ciclo do Ácido Cítrico , Complexo I de Transporte de Elétrons/química , Complexo I de Transporte de Elétrons/metabolismo , Eletroforese em Gel Bidimensional , Flavoproteínas/química , Flavoproteínas/metabolismo , Complexos de Proteínas Captadores de Luz/química , Complexos de Proteínas Captadores de Luz/metabolismo , Proteínas de Membrana/química , Proteínas de Membrana Transportadoras/química , Proteínas de Membrana Transportadoras/metabolismo , Fixação de Nitrogênio , Rhodospirillum rubrum/crescimento & desenvolvimento , Frações Subcelulares/química
15.
PLoS One ; 5(11): e14070, 2010 Nov 22.
Artigo em Inglês | MEDLINE | ID: mdl-21124924

RESUMO

Metabolic processes in biological cells are commonly either characterized at the level of individual enzymes and metabolites or at the network level. Often these two paradigms are considered as mutually exclusive because concepts from neither side are suited to describe the complete range of scales. Additionally, when modeling metabolic or regulatory cellular systems, often a large fraction of the required kinetic parameters are unknown. This even applies to such simple and extensively studied systems like the photosynthetic apparatus of purple bacteria. Using the chromatophore vesicles of Rhodobacter sphaeroides as a model system, we show that a consistent kinetic model emerges when fitting the dynamics of a molecular stochastic simulation to a set of time dependent experiments even though about two thirds of the kinetic parameters in this system are not known from experiment. Those kinetic parameters that were previously known all came out in the expected range. The simulation model was built from independent protein units composed of elementary reactions processing single metabolites. This pools-and-proteins approach naturally compiles the wealth of available molecular biological data into a systemic model and can easily be extended to describe other systems by adding new protein or nucleic acid types. The automated parameter optimization, performed with an evolutionary algorithm, reveals the sensitivity of the model to the value of each parameter and the relative importances of the experiments used. Such an analysis identifies the crucial system parameters and guides the setup of new experiments that would add most knowledge for a systemic understanding of cellular compartments. The successful combination of the molecular model and the systemic parametrization presented here on the example of the simple machinery for bacterial photosynthesis shows that it is actually possible to combine molecular and systemic modeling. This framework can now straightforwardly be applied to other currently less well characterized but biologically more relevant systems.


Assuntos
Cromatóforos Bacterianos/metabolismo , Modelos Biológicos , Simulação de Dinâmica Molecular , Rhodobacter sphaeroides/metabolismo , Algoritmos , Simulação por Computador , Complexo III da Cadeia de Transporte de Elétrons/química , Complexo III da Cadeia de Transporte de Elétrons/metabolismo , Cinética , Fotossíntese/fisiologia , Multimerização Proteica , Rhodobacter sphaeroides/fisiologia , Biologia de Sistemas
16.
Photosynth Res ; 106(3): 215-20, 2010 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-20886371

RESUMO

The core light-harvesting complex (LH1) of purple sulfur photosynthetic bacterium Thermochromatium tepidum exhibits an unusual absorption maximum at 915 nm for the Q (y) transition, and is highly stable when copurified with reaction center (RC) in a LH1-RC complex form. In previous studies, we demonstrated that the calcium ions are involved in both the large red shift and the enhanced thermal stability, and possible Ca(2+)-binding sites were proposed. In this study, we further examine the putative binding sites in the LH1 polypeptides using purified chromatophores. Incubation of the chromatophores in the presence of EDTA revealed no substantial change in the absorption maximum of LH1 Q (y) transition, whereas further addition of detergents to the chromatophores-EDTA solution resulted in a blue-shift for the LH1 Q (y) peak with the final position at 892 nm. The change of the LH1 Q (y) peak to shorter wavelengths was relatively slow compared to that of the purified LH1-RC complex. The blue-shifted LH1 Q (y) transition in chromatophores can be restored to its original position by addition of Ca(2+) ions. The results suggest that the Ca(2+)-binding site is exposed on the inner surface of chromatophores, corresponding to the C-terminal region of LH1. An Asp-rich fragment in the LH1 α-polypeptide is considered to form a crucial part of the binding network. The slow response of LH1 Q (y) transition upon exposure to EDTA is discussed in terms of the membrane environment in the chromatophores.


Assuntos
Cálcio/metabolismo , Chromatiaceae/metabolismo , Complexos de Proteínas Captadores de Luz/metabolismo , Temperatura , Sequência de Aminoácidos , Cromatóforos Bacterianos/metabolismo , Sítios de Ligação , Complexos de Proteínas Captadores de Luz/química , Dados de Sequência Molecular , Análise Espectral , Fatores de Tempo
17.
Biophys J ; 99(1): 67-75, 2010 Jul 07.
Artigo em Inglês | MEDLINE | ID: mdl-20655834

RESUMO

Photosynthetic chromatophore vesicles found in some purple bacteria constitute one of the simplest light-harvesting systems in nature. The overall architecture of chromatophore vesicles and the structural integration of vesicle function remain poorly understood despite structural information being available on individual constituent proteins. An all-atom structural model for an entire chromatophore vesicle is presented, which improves upon earlier models by taking into account the stoichiometry of core and antenna complexes determined by the absorption spectrum of intact vesicles in Rhodobacter sphaeroides, as well as the well-established curvature-inducing properties of the dimeric core complex. The absorption spectrum of low-light-adapted vesicles is shown to correspond to a light-harvesting-complex 2 to reaction center ratio of 3:1. A structural model for a vesicle consistent with this stoichiometry is developed and used in the computation of excitonic properties. Considered also is the packing density of antenna and core complexes that is high enough for efficient energy transfer and low enough for quinone diffusion from reaction centers to cytochrome bc(1) complexes.


Assuntos
Cromatóforos Bacterianos/metabolismo , Metabolismo Energético , Modelos Biológicos , Fotossíntese , Rhodobacter sphaeroides/citologia , Rhodobacter sphaeroides/metabolismo , Absorção , Adaptação Fisiológica/efeitos da radiação , Cromatóforos Bacterianos/química , Cromatóforos Bacterianos/efeitos da radiação , Metabolismo Energético/efeitos da radiação , Transferência de Energia/efeitos da radiação , Luz , Complexos de Proteínas Captadores de Luz/metabolismo , Modelos Moleculares , Conformação Molecular , Fotossíntese/efeitos da radiação , Rhodobacter sphaeroides/fisiologia , Rhodobacter sphaeroides/efeitos da radiação , Análise Espectral
18.
J Mol Biol ; 393(1): 27-35, 2009 Oct 16.
Artigo em Inglês | MEDLINE | ID: mdl-19631224

RESUMO

In photosynthetic organisms, membrane pigment-protein complexes [light-harvesting complex 1 (LH1) and light-harvesting complex 2 (LH2)] harvest solar energy and convert sunlight into an electrical and redox potential gradient (reaction center) with high efficiency. Recent atomic force microscopy studies have described their organization in native membranes. However, the cytochrome (cyt) bc(1) complex remains unseen, and the important question of how reduction energy can efficiently pass from core complexes (reaction center and LH1) to distant cyt bc(1) via membrane-soluble quinones needs to be addressed. Here, we report atomic force microscopy images of entire chromatophores of Rhodospirillum photometricum. We found that core complexes influence their molecular environment within a critical radius of approximately 250 A. Due to the size mismatch with LH2, lipid membrane spaces favorable for quinone diffusion are found within this critical radius around cores. We show that core complexes form a network throughout entire chromatophores, providing potential quinone diffusion pathways that will considerably speed the redox energy transfer to distant cyt bc(1). These long-range quinone pathway networks result from cooperative short-range interactions of cores with their immediate environment.


Assuntos
Cromatóforos Bacterianos/metabolismo , Cromatóforos Bacterianos/ultraestrutura , Benzoquinonas/metabolismo , Membrana Celular/química , Membrana Celular/ultraestrutura , Rhodospirillum/química , Rhodospirillum/ultraestrutura , Microscopia de Força Atômica
19.
Anal Biochem ; 387(1): 95-101, 2009 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-19454250

RESUMO

A procedure has been developed for directly depositing membrane fragments derived from bacterial cells (chromatophores from Rhodopseudomonas sphaeroides) and mammalian cells (mu-opioid receptor- and MC4 receptor-transfected human embryonic kidney (HEK) cells and rat trigeminal ganglion cells) on the silica surface of a plasmon-waveguide resonance (PWR) spectrometer. Binding of ligands (cytochrome c(2) for the chromatophores, the peptide agonists DAMGO and melanotan-II that are specific for the mu-opioid and MC4 receptors, and two nonpeptide agonists that are specific for the CB1 receptor) to these membrane fragments has been observed and characterized with high sensitivity using PWR spectral shifts. The K(D) values obtained are in excellent agreement with conventional pharmacological assays and with prior PWR studies using purified receptors inserted into deposited lipid bilayer membranes. These studies provide a new tool for obtaining useful biological information about receptor-mediated processes in real biological membranes.


Assuntos
Proteínas de Membrana/química , Receptores Opioides mu/metabolismo , Ressonância de Plasmônio de Superfície/métodos , Animais , Cromatóforos Bacterianos/metabolismo , Citocromos c2/metabolismo , Humanos , Ligantes , Ratos , Receptores Opioides mu/química , Rhodobacter sphaeroides/metabolismo , Transfecção
20.
J Lipid Res ; 50(2): 256-64, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-18716316

RESUMO

Chromatophores isolated from cells of Rhodobacter sphaeroides exposed to hypertonic solutions were enriched in cardiolipin (CL). Because CL levels are raised by increasing the incubation time of R. sphaeroides in hypertonic solutions, it was possible to isolate chromatophores containing different CL amounts by starting from cells incubated in hypertonic solutions for different times. The functionality and stability of the photosynthetic proteins in chromatophore membranes having different CL levels were investigated. Reaction center (RC) stabilization with respect to thermal denaturation and photoxidative damage was observed by flash photolysis and fluorescence emission experiments in CL-enriched chromatophores. To gain detailed information about the structures of endogenous CLs, this lipid family was isolated and purified by preparative TLC, and characterized by high-resolution mass spectrometry. We conclude that osmotic shock can be used as a tool to modulate CL levels in isolated chromatophores and to change the composition of the RC lipid annulus, avoiding membrane artifacts introduced by the use of detergents.


Assuntos
Cromatóforos Bacterianos/metabolismo , Cardiolipinas/metabolismo , Rhodobacter sphaeroides/metabolismo , Cardiolipinas/química , Espectrometria de Massas , Osmose , Pressão Osmótica , Fotólise , Espectrometria de Fluorescência , Relação Estrutura-Atividade , Fatores de Tempo
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